PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00732.10
Common NameJCGZ_07169, LOC105637644
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 203aa    MW: 22923.6 Da    PI: 5.8037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00732.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-18555155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                   ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Jcr4S00732.10  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRIWLGTFETAEAAARAYDQAAILMNG 55
                   59*****999.**********8.....334**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.16E-22563No hitNo description
SMARTSM003805.2E-39669IPR001471AP2/ERF domain
PfamPF008474.0E-11655IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-20664IPR016177DNA-binding domain
PROSITE profilePS5103221.97663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-32664IPR001471AP2/ERF domain
PRINTSPR003673.4E-10718IPR001471AP2/ERF domain
PRINTSPR003673.4E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVQSKKFRGV RQRQWGSWVS EIRHPLLKRR IWLGTFETAE AAARAYDQAA ILMNGQNAKT  60
NFPRSDLEEA RDNHIINSNN NNEYPLPPKA LSELLDTKLR KCCKDPSLAS LTCLRLDNDS  120
SHIGVWQKRG GSSSSSNWVM RVELGNKKTQ VTEEEEEEDG SSLSSVSSLS SVLSQAVGDE  180
RKNGTDEEDR IAMQMVEELL NWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16263163ATERF1
3gcc_A1e-16263163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471402e-67EF147140.1 Populus trichocarpa clone WS01228_C18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076579.11e-149PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ3E9588e-74SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A067KF171e-149A0A067KF17_JATCU; Uncharacterized protein
STRINGPOPTR_0006s26990.12e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.11e-63ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]